STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0065PFAM: O-antigen polymerase; KEGG: rca:Rcas_2722 O-antigen polymerase. (502 aa)    
Predicted Functional Partners:
Haur_0064
KEGG: rrs:RoseRS_2654 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     0.966
Haur_1796
PFAM: sugar transferase; KEGG: rca:Rcas_1950 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.815
Haur_4228
PFAM: sugar transferase; KEGG: rca:Rcas_4266 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.815
Haur_4125
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: rca:Rcas_1828 polysaccharide biosynthesis protein.
 
  
 0.806
Haur_4465
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4391 O-antigen polymerase.
  
     0.752
Haur_3383
KEGG: rrs:RoseRS_3713 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     0.741
Haur_3384
KEGG: rrs:RoseRS_3991 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     0.728
Haur_3007
KEGG: rca:Rcas_3121 hypothetical protein.
  
     0.705
Haur_3866
KEGG: rca:Rcas_0292 glycosyl transferase family 39.
  
     0.685
Haur_0356
KEGG: rrs:RoseRS_2152 hypothetical protein.
  
 0.664
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.