STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0143KEGG: rrs:RoseRS_3963 PfkB domain protein. (259 aa)    
Predicted Functional Partners:
Haur_0142
Hypothetical protein.
       0.773
Haur_3866
KEGG: rca:Rcas_0292 glycosyl transferase family 39.
  
     0.729
Haur_2537
Conserved hypothetical protein; KEGG: rrs:RoseRS_0660 uncharacterized membrane protein-like protein.
  
     0.708
Haur_1905
KEGG: det:DET0571 hypothetical protein.
 
 
   0.692
Haur_2538
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4.
  
     0.687
Haur_2793
PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_0089 conserved hypothetical protein 374.
 
     0.632
Haur_3144
KEGG: rrs:RoseRS_0323 hypothetical protein.
  
     0.610
Haur_0082
PFAM: LmbE family protein; KEGG: rrs:RoseRS_3974 LmbE family protein.
  
   
 0.603
Haur_0969
PFAM: Translin; KEGG: rca:Rcas_3397 translin.
  
    0.578
Haur_3117
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_1285 protein of unknown function DUF95, transmembrane.
  
     0.575
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.