STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0232Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: rca:Rcas_0896 phage shock protein A, PspA. (219 aa)    
Predicted Functional Partners:
Haur_4547
KEGG: ppd:Ppro_2908 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
    
 
 0.775
Haur_1110
PFAM: PspC domain protein; KEGG: rrs:RoseRS_0522 phage shock protein C, PspC.
  
 
 0.698
Haur_4670
PFAM: PspC domain protein; KEGG: rca:Rcas_2330 phage shock protein C, PspC.
  
 
 0.698
Haur_4864
PFAM: PspC domain protein; KEGG: rrs:RoseRS_2350 phage shock protein C, PspC.
  
 
 0.698
Haur_4996
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: tma:TM1156 hypothetical protein.
  
 
 0.698
Haur_1412
KEGG: ret:RHE_CH03137 hypothetical protein.
 
  
 0.593
Haur_1413
PFAM: band 7 protein; KEGG: swi:Swit_0005 band 7 protein.
 
  
 0.541
Haur_0233
PFAM: Peptidoglycan-binding LysM; KEGG: dsy:DSY1185 hypothetical protein.
       0.509
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.