STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0233PFAM: Peptidoglycan-binding LysM; KEGG: dsy:DSY1185 hypothetical protein. (242 aa)    
Predicted Functional Partners:
Haur_1784
KEGG: amt:Amet_4345 hypothetical protein.
  
 
 0.949
Haur_1773
KEGG: rci:RCIX1658 hypothetical protein.
  
 
 0.943
Haur_1783
PFAM: GPW/gp25 family protein; KEGG: rci:RCIX1675 hypothetical protein.
  
   0.942
Haur_2979
Hypothetical protein; KEGG: cme:CMH001C similar to hedgehog protein Pfam: Kelch_2 Kelch_1 Hint PROSITE: INTEIN_N_TER PRO_RICH THR_RICH.
   
    0.657
Haur_4641
TIGRFAM: conserved repeat domain; KEGG: hsa:4583 mucin 2, oligomeric mucus/gel-forming.
   
    0.657
Haur_4815
PFAM: Ferritin Dps family protein; KEGG: nha:Nham_2872 ferritin and Dps; Belongs to the Dps family.
   
  
 0.516
Haur_0232
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: rca:Rcas_0896 phage shock protein A, PspA.
       0.509
Haur_2827
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
  
 0.508
Haur_0234
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2548 glycosyl transferase, group 1.
       0.419
Haur_0235
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rca:Rcas_0336 serine/threonine protein kinase.
       0.419
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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