STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0282PFAM: XisI protein; KEGG: ter:Tery_0527 FdxN element excision controlling factor protein. (103 aa)    
Predicted Functional Partners:
Haur_2549
PFAM: protein of unknown function DUF87; KEGG: rrs:RoseRS_1701 protein of unknown function DUF87.
  
     0.687
Haur_0280
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ade:Adeh_2942 periplasmic sensor hybrid histidine kinase.
       0.678
Haur_0281
Hypothetical protein.
       0.678
Haur_0212
KEGG: rca:Rcas_1227 hypothetical protein.
  
     0.667
Haur_2232
TIGRFAM: CRISPR-associated protein Cas6; KEGG: tth:TT_P0204 hypothetical protein.
  
     0.642
Haur_0283
Hypothetical protein.
       0.639
Haur_4301
TIGRFAM: putative integral membrane protein TIGR02587; PFAM: conserved hypothetical protein; KEGG: gvi:gll2152 hypothetical protein.
  
     0.637
Haur_3672
Conserved hypothetical protein; KEGG: gvi:gll3079 unknown protein.
  
     0.631
Haur_1481
KEGG: ava:Ava_3040 hypothetical protein.
  
     0.624
Haur_0211
KEGG: rca:Rcas_2083 hypothetical protein.
  
     0.622
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.