STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0392PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: rrs:RoseRS_0879 alpha/beta hydrolase fold. (273 aa)    
Predicted Functional Partners:
Haur_0390
Magnesium chelatase; SMART: AAA ATPase; KEGG: rca:Rcas_4086 magnesium chelatase.
  
    0.760
Haur_0391
PFAM: protein of unknown function DUF156; KEGG: gtn:GTNG_1614 hypothetical protein.
  
    0.759
Haur_2809
PFAM: alpha/beta hydrolase fold; KEGG: rci:RCIX982 putative hydrolase (alpha/beta fold family).
  
     0.733
Haur_2008
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: rpc:RPC_3036 amino acid adenylation.
  
 
 0.552
Haur_0393
KEGG: swi:Swit_3244 metal dependent phosphohydrolase.
       0.459
Haur_3960
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mxa:MXAN_4526 polyketide synthase type I.
  
 
 0.449
Haur_1044
PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein.
  
     0.438
Haur_1873
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ana:alr2679 polyketide synthase.
  
 
 0.431
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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