STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0403PFAM: regulatory protein TetR; KEGG: bcl:ABC0634 transcriptional regulator, TetR family. (195 aa)    
Predicted Functional Partners:
Haur_1751
PFAM: regulatory protein TetR; KEGG: sco:SCO0310 TetR-family transcriptional regulator.
  
     0.774
Haur_0404
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: sme:SMc01405 hypothetical protein.
       0.527
Haur_0402
PFAM: band 7 protein; KEGG: cfa:479783 major vault protein.
  
    0.457
Haur_1701
PFAM: regulatory protein MerR; KEGG: ana:all0345 transcriptional regulator.
  
     0.417
Haur_2124
Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bch:Bcen2424_1205 transcriptional regulator, BadM/Rrf2 family.
  
     0.408
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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