STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_0471PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH0699 ribosomal-protein-alanine N-acetyltransferase. (196 aa)    
Predicted Functional Partners:
Haur_2430
PFAM: GCN5-related N-acetyltransferase; KEGG: fno:Fnod_1206 GCN5-related N-acetyltransferase.
  
     0.702
Haur_0470
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rrs:RoseRS_3197 protein of unknown function DUF21.
  
    0.557
Haur_0472
Hypothetical protein.
       0.550
Haur_2942
PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_2355 GCN5-related N-acetyltransferase.
  
     0.478
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.444
Haur_4688
PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_1266 GCN5-related N-acetyltransferase.
  
     0.431
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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