STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1007KEGG: rca:Rcas_4339 hypothetical protein. (174 aa)    
Predicted Functional Partners:
Haur_0932
PFAM: Roadblock/LC7 family protein; KEGG: rca:Rcas_4340 roadblock/LC7 family protein.
 
 
 0.890
Haur_0845
KEGG: rca:Rcas_1731 hypothetical protein.
 
     0.771
Haur_0378
KEGG: rrs:RoseRS_3914 hypothetical protein.
  
 
   0.701
Haur_0930
KEGG: rrs:RoseRS_0201 hypothetical protein.
 
 
   0.677
Haur_4223
PFAM: Roadblock/LC7 family protein; KEGG: rca:Rcas_0033 roadblock/LC7 family protein.
 
 
 0.615
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
   
 0.567
Haur_0380
PFAM: Roadblock/LC7 family protein; KEGG: rrs:RoseRS_3912 roadblock/LC7 family protein.
 
 
 0.559
Haur_0933
PFAM: Roadblock/LC7 family protein; KEGG: mem:Memar_1006 roadblock/LC7 family protein.
  
 
 0.530
Haur_1137
PFAM: Roadblock/LC7 family protein; KEGG: rrs:RoseRS_3912 roadblock/LC7 family protein.
  
 
 0.500
Haur_1348
PFAM: Roadblock/LC7 family protein.
  
 
 0.500
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.