STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1033PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3354 ABC transporter related. (427 aa)    
Predicted Functional Partners:
Haur_1034
PFAM: ABC-2 type transporter; KEGG: sus:Acid_4640 ABC-2 type transporter.
 
 0.999
Haur_3132
PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_3367 ABC-2 type transporter.
 0.997
Haur_3133
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0858 ABC transporter related.
  
  
 
0.914
Haur_1032
PFAM: glycosyl transferase group 1; KEGG: rci:RCIX212 putative glycosyltransferase (group 1).
  
   0.808
Haur_1030
ADP-heptose:LPS heptosyltransferase-like; KEGG: cph:Cpha266_0356 hypothetical protein.
     
 0.795
Haur_1031
PFAM: Methyltransferase type 11; KEGG: acr:Acry_2401 methyltransferase type 11.
       0.791
Haur_1029
TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: pca:Pcar_1282 ADP-heptose synthase.
     
 0.786
Haur_1028
PFAM: O-methyltransferase family 3; KEGG: rpe:RPE_4247 glycosyl transferase, family 2.
     0.658
Haur_0165
KEGG: rca:Rcas_3242 phosphoribosyltransferase.
   
    0.539
Haur_1027
PFAM: glycosyl transferase group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein.
  
   0.533
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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