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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfsAPFAM: sugar fermentation stimulation protein; KEGG: mta:Moth_0431 sugar fermentation stimulation protein; Belongs to the SfsA family. (248 aa)    
Predicted Functional Partners:
Haur_4400
PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: rrs:RoseRS_3189 HhH-GPD family protein.
 
    0.929
Haur_1067
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_3239 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.539
Haur_1068
PFAM: Dual specificity protein phosphatase; KEGG: rca:Rcas_3944 dual specificity protein phosphatase.
       0.539
Haur_1065
rfaE bifunctional protein; TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: pca:Pcar_1282 ADP-heptose synthase.
       0.519
Haur_1066
PFAM: PfkB domain protein; KEGG: syc:syc1764_c ADP-heptose synthase.
       0.519
Haur_3229
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sth:STH1607 tRNA/rRNA methyltransferase.
 
     0.402
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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