STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1087Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: atc:AGR_L_3469 hypothetical protein. (222 aa)    
Predicted Functional Partners:
Haur_1086
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcl:ABC3541 hypothetical protein.
       0.546
Haur_1088
PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM.
       0.447
Haur_1089
KEGG: rrs:RoseRS_4011 polysaccharide deacetylase.
       0.441
Haur_1090
KEGG: rca:Rcas_0261 hypothetical protein.
       0.441
Haur_1091
KEGG: rca:Rcas_0262 hypothetical protein.
       0.441
Haur_0955
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-70 ECF type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rxy:Rxyl_2365 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.
  
     0.404
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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