STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1144PFAM: Patatin; KEGG: rrs:RoseRS_2164 patatin. (411 aa)    
Predicted Functional Partners:
Haur_1143
PFAM: PHA accumulation regulator DNA-binding protein; KEGG: rrs:RoseRS_2163 PHA accumulation regulator DNA-binding protein.
       0.639
Haur_0356
KEGG: rrs:RoseRS_2152 hypothetical protein.
  
     0.594
Haur_0085
KEGG: rca:Rcas_3218 hypothetical protein.
  
     0.578
Haur_0334
PFAM: Patatin; KEGG: aha:AHA_1285 alpha-beta superfamily hydrolase.
  
     0.563
Haur_4364
PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: rca:Rcas_1617 shikimate/quinate 5-dehydrogenase.
  
     0.563
Haur_4861
PFAM: Patatin; KEGG: nca:Noca_2085 patatin.
  
     0.553
Haur_0204
PFAM: regulatory protein TetR; KEGG: gsu:GSU0205 transcriptional regulator, TetR family.
  
     0.499
Haur_0468
PFAM: iron permease FTR1; KEGG: rrs:RoseRS_4468 iron permease FTR1.
  
    0.464
Haur_0064
KEGG: rrs:RoseRS_2654 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.458
Haur_4052
PFAM: Patatin; KEGG: rrs:RoseRS_0335 patatin.
  
     0.453
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.