STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1180PFAM: extracellular solute-binding protein family 1; KEGG: syn:slr0529 ABC-type glucosylglycerol transport system substrate-binding protein. (485 aa)    
Predicted Functional Partners:
Haur_1178
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: syn:slr0531 ABC-type glucosylglycerol transport system permease protein.
 
 0.983
Haur_1179
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: syn:slr0530 ABC-type glucosylglycerol transport system permease protein.
 
 0.982
Haur_0777
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0525 ABC transporter related.
  
 0.927
Haur_1181
PFAM: ROK family protein; KEGG: nca:Noca_4485 ROK family protein.
  
    0.501
Haur_1182
PFAM: ROK family protein; KEGG: rca:Rcas_0477 ROK family protein.
 
    0.487
Haur_1245
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1587 sugar permeases.
  
 
 0.465
Haur_1244
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1586 ABC transporter membrane component.
  
 
 0.455
Haur_0137
KEGG: nca:Noca_3677 hypothetical protein.
  
     0.440
Haur_0300
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_1018 binding-protein-dependent transport systems inner membrane component.
  
 
 0.427
Haur_1152
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_0230 binding-protein-dependent transport systems inner membrane component.
  
 
 0.427
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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