STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1231PFAM: NHL repeat containing protein; KEGG: gvi:gll4002 unknown protein. (1049 aa)    
Predicted Functional Partners:
Haur_1556
KEGG: dge:Dgeo_2471 hypothetical protein.
  
   
 0.700
Haur_1558
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: ana:all0415 hypothetical protein.
 
     0.698
Haur_1557
PFAM: UbiA prenyltransferase; KEGG: dge:Dgeo_2470 UbiA prenyltransferase.
  
     0.687
Haur_1555
PFAM: TatD-related deoxyribonuclease; KEGG: dge:Dgeo_2472 TatD-related deoxyribonuclease.
 
     0.651
Haur_1553
PFAM: 3-dehydroquinate synthase; KEGG: dge:Dgeo_2474 3-dehydroquinate synthase.
  
     0.593
Haur_1232
PFAM: PKD domain containing protein; KEGG: dge:Dgeo_2672 glycosyl hydrolase family 98, putative carbohydrate binding module.
 
    
0.570
Haur_0935
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: dge:Dgeo_2670 glycosyl hydrolase family 98, putative carbohydrate binding module.
 
     0.499
Haur_0822
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: dge:Dgeo_2665 glycosyl hydrolase family 98, putative carbohydrate binding module.
 
     0.469
Haur_2812
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: dge:Dgeo_2670 glycosyl hydrolase family 98, putative carbohydrate binding module.
 
     0.465
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.