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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1237PFAM: SNARE associated Golgi protein; KEGG: rrs:RoseRS_3144 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Haur_1238
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cyb:CYB_2402 CDP-alcohol phosphatidyltransferase family protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.879
Haur_1236
KEGG: stp:Strop_4231 hypothetical protein.
 
  
 0.871
Haur_1235
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_2069 binding-protein-dependent transport systems inner membrane component.
 
     0.805
Haur_1234
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_0130 ABC transporter, permease protein.
       0.732
Haur_1233
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: amt:Amet_3292 ABC transporter related.
       0.728
Haur_1239
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: gvi:glr3235 dTDP-glucose 4-6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.420
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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