STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1447PFAM: major facilitator superfamily MFS_1; KEGG: acr:Acry_2064 major facilitator superfamily MFS_1. (432 aa)    
Predicted Functional Partners:
Haur_1446
PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_2988 GCN5-related N-acetyltransferase.
       0.773
Haur_1448
Hypothetical protein.
       0.773
Haur_1449
PFAM: cell cycle protein; KEGG: rca:Rcas_1647 cell cycle protein; Belongs to the SEDS family.
     
 0.763
Haur_1450
Diguanylate cyclase; KEGG: fal:FRAAL4022 putative two component sensor serine/threonine kinase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; protein kinase; GAF domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase.
     
 0.631
Haur_2883
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rxy:Rxyl_0055 NAD-dependent epimerase/dehydratase.
  
     0.541
Haur_1445
PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0412 multi-sensor signal transduction histidine kinase.
       0.519
Haur_1619
PFAM: GCN5-related N-acetyltransferase; KEGG: rca:Rcas_0427 GCN5-related N-acetyltransferase.
  
     0.446
Haur_1740
KEGG: atc:AGR_L_2304 hypothetical protein.
  
     0.410
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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