STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1460PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_3728 bifunctional deaminase-reductase domain protein. (193 aa)    
Predicted Functional Partners:
Haur_1520
PFAM: bifunctional deaminase-reductase domain protein; KEGG: bce:BC3158 pyrimidine reductase.
  
     0.760
Haur_2085
PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_1085 bifunctional deaminase-reductase domain protein.
  
     0.731
Haur_3816
PFAM: bifunctional deaminase-reductase domain protein; KEGG: mxa:MXAN_6138 RibD domain protein.
  
     0.653
Haur_1459
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: art:Arth_0161 drug resistance transporter, EmrB/QacA subfamily.
   
   0.625
Haur_0871
KEGG: stp:Strop_2698 hypothetical protein.
  
     0.429
Haur_0867
KEGG: stp:Strop_0597 hypothetical protein.
  
     0.427
Haur_1461
KEGG: ttj:TTHB183 hypothetical protein.
       0.421
Haur_0870
PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: stp:Strop_2699 ASPIC/UnbV domain protein.
 
     0.418
Haur_4431
PFAM: protein of unknown function DUF839; KEGG: lic:LIC20047 hypothetical protein.
 
     0.414
Haur_2356
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rci:RCIX774 putative lactoylglutathione lyase.
 
    0.406
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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