STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1466PFAM: TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: rca:Rcas_1035 sodium/hydrogen exchanger. (487 aa)    
Predicted Functional Partners:
Haur_1467
PFAM: protein of unknown function DUF214; KEGG: rca:Rcas_1858 protein of unknown function DUF214.
       0.668
Haur_1468
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2431 ABC transporter related.
       0.668
Haur_3106
TIGRFAM: putative regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: rca:Rcas_2140 putative regulatory protein, FmdB family.
      0.614
Haur_1469
PFAM: heat shock protein DnaJ domain protein; KEGG: rrs:RoseRS_0286 heat shock protein DnaJ domain protein.
       0.460
Haur_1470
PFAM: phospholipid/glycerol acyltransferase; KEGG: pth:PTH_1618 1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.422
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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