STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1582PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_1230 glycosyl transferase, group 1. (394 aa)    
Predicted Functional Partners:
Haur_1581
KEGG: rrs:RoseRS_1231 hypothetical protein.
       0.773
Haur_1583
PFAM: protein of unknown function DUF1486; KEGG: bte:BTH_II1744 hypothetical protein.
       0.741
Haur_1212
PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_0218 glycosyl transferase group 1.
 
     0.624
Haur_1580
KEGG: mxa:MXAN_3813 hypothetical protein.
       0.580
nrdR
ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
       0.555
Haur_1585
KEGG: rrs:RoseRS_0988 restriction endonuclease.
       0.548
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
       0.507
Haur_1579
PFAM: NMT1/THI5 like domain protein; KEGG: rrs:RoseRS_2762 membrane lipoprotein lipid attachment site.
  
    0.480
Haur_4166
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1999 tetratricopeptide TPR_2 repeat protein.
  
     0.443
Haur_1578
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rca:Rcas_2389 binding-protein-dependent transport systems inner membrane component.
       0.440
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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