STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1590Hypothetical protein. (227 aa)    
Predicted Functional Partners:
Haur_1589
Hypothetical protein.
       0.773
Haur_1591
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sth:STH2043 RNA polymerase ECF-type sigma factor.
       0.773
Haur_1592
TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rca:Rcas_1643 HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily.
       0.547
Haur_1593
PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_0375 glycosyl transferase family 2.
       0.547
Haur_1594
PFAM: putative esterase; KEGG: ppd:Ppro_1478 putative esterase.
       0.547
Haur_1595
PFAM: polysaccharide deacetylase; KEGG: rrs:RoseRS_2358 hypothetical protein.
       0.506
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.