STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1830PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO0700 probable ABC transporter protein, ATP-binding component. (596 aa)    
Predicted Functional Partners:
Haur_1831
SMART: leucine-rich repeat-containing protein typical subtype; KEGG: lil:LA2447 outermembrane protein.
       0.586
Haur_1720
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rca:Rcas_1232 ABC transporter related; Belongs to the ABC transporter superfamily.
 
     
0.502
Haur_3741
PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: mxa:MXAN_2853 putative lantibiotic ABC transporter, permease/ATP-binding protein.
 
 
  
0.451
Haur_1828
PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: ter:Tery_0225 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters.
 
 
  
0.449
thrS
KEGG: rrs:RoseRS_0110 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
   0.449
Haur_0886
PFAM: Acetyl xylan esterase; KEGG: rrs:RoseRS_0796 acetyl xylan esterase.
  
     0.448
Haur_2008
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: rpc:RPC_3036 amino acid adenylation.
  
 
 0.448
Haur_1869
PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: mxa:MXAN_2853 putative lantibiotic ABC transporter, permease/ATP-binding protein.
 
 
  
0.443
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.427
Haur_1438
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ncr:NCU05160.1 hypothetical protein.
 
 0.425
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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