STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_1840KEGG: mxa:MXAN_2889 radical SAM domain protein. (288 aa)    
Predicted Functional Partners:
Haur_1841
KEGG: mxa:MXAN_2888 coproporphyrinogen III oxidase family protein; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
  
 0.960
Haur_1842
KEGG: mxa:MXAN_2887 hypothetical protein.
 
    0.956
Haur_1844
KEGG: tfu:Tfu_0736 hypothetical protein.
 
    0.930
Haur_1845
KEGG: tfu:Tfu_0736 hypothetical protein.
 
    0.928
Haur_1843
KEGG: tfu:Tfu_0737 hypothetical protein.
 
    0.918
Haur_1846
KEGG: tfu:Tfu_0736 hypothetical protein.
 
    0.900
Haur_1847
KEGG: tfu:Tfu_0736 hypothetical protein.
 
    0.890
Haur_2893
Conserved hypothetical protein; KEGG: ana:alr0811 unknown protein.
 
     0.774
Haur_2892
KEGG: ava:Ava_0604 hypothetical protein.
  
     0.735
Haur_1996
PFAM: lipolytic protein G-D-S-L family; KEGG: stp:Strop_1739 lipolytic enzyme, G-D-S-L family.
  
     0.601
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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