Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Haur_2001PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05460 probable macrolide-efflux transmembrane protein. (425 aa)    
Predicted Functional Partners:
Haur_2002
PFAM: regulatory protein TetR; KEGG: bce:BC1059 transcriptional regulator, TetR family.
       0.773
Haur_2027
PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu1442 hypothetical protein.
  
     0.666
Haur_3223
KEGG: rrs:RoseRS_4061 hypothetical protein.
 
     0.400
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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