STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2100PFAM: transport system permease protein; KEGG: ava:Ava_B0152 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (334 aa)    
Predicted Functional Partners:
Haur_2099
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ava:Ava_B0153 ABC transporter-like.
 
 0.979
Haur_2101
PFAM: periplasmic binding protein; KEGG: fra:Francci3_4239 periplasmic binding protein.
 
 
 0.945
Haur_1054
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0712 ABC transporter-related protein.
 
 0.909
Haur_1809
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_3299 ABC transporter related.
 
 0.904
Haur_1737
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0416 ABC transporter related.
 
 0.899
Haur_1056
PFAM: periplasmic binding protein; KEGG: det:DET0684 ABC-type cobalamin/Fe3+-siderophores transport system, periplasmic binding protein, putative.
 
 
 0.898
Haur_2112
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3089 ABC transporter related.
 
 0.860
Haur_2098
PFAM: ThiJ/PfpI domain protein; KEGG: sma:SAV1666 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme.
       0.773
Haur_3896
PFAM: periplasmic binding protein; KEGG: rrs:RoseRS_3091 periplasmic binding protein.
 
 
 0.753
Haur_1806
PFAM: periplasmic binding protein; KEGG: csa:Csal_2699 periplasmic binding protein.
 
 
 0.664
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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