STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2223KEGG: rca:Rcas_0831 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Haur_0456
PFAM: Methyltransferase type 11; KEGG: rca:Rcas_2343 methyltransferase type 11.
  
     0.746
Haur_3630
KEGG: rca:Rcas_2727 glycosyl transferase family 39.
  
    0.734
Haur_0418
KEGG: rca:Rcas_3116 hypothetical protein.
  
    0.733
Haur_4537
Hypothetical protein; KEGG: rrs:RoseRS_1623 helicase.
  
     0.731
Haur_0090
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3987 tetratricopeptide TPR_2 repeat protein.
  
     0.719
Haur_4245
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; PA14 domain protein; SMART: Animal peptidoglycan recognition protein PGRP; PA14-related domain protein; KEGG: rrs:RoseRS_1610 N-acetylmuramoyl-L-alanine amidase, family 2.
  
     0.717
Haur_4348
PFAM: iron-containing alcohol dehydrogenase; KEGG: rrs:RoseRS_2082 iron-containing alcohol dehydrogenase.
 
      0.692
Haur_4225
KEGG: rca:Rcas_2725 hypothetical protein.
  
     0.691
Haur_4332
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
     0.687
Haur_1529
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: yen:YE0810 L-sorbose 1-phosphate reductase.
  
 
 0.685
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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