STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2425KEGG: deb:DehaBAV1_0771 ABC-type Na+ efflux pump permease component-like protein. (400 aa)    
Predicted Functional Partners:
Haur_2672
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA4366 ABC transporter, ATP-binding protein.
 
  
 0.838
Haur_2426
Hypothetical protein.
       0.773
Haur_2427
PFAM: Amidohydrolase 3; KEGG: rca:Rcas_3832 amidohydrolase 3.
       0.773
Haur_1890
PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0216 ABC-2 type transporter.
 
 
 0.413
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.