STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2513PFAM: regulatory protein LuxR; KEGG: rha:RHA1_ro06092 response regulator, two-component system. (78 aa)    
Predicted Functional Partners:
Haur_4259
KEGG: rca:Rcas_2148 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.515
Haur_2514
PFAM: luciferase family protein; KEGG: bam:Bamb_1048 luciferase family protein.
   
   0.510
Haur_4547
KEGG: ppd:Ppro_2908 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.445
Haur_3775
PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rca:Rcas_3064 GAF sensor signal transduction histidine kinase.
 
 
 0.435
Haur_4216
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: rca:Rcas_2470 diguanylate cyclase with GAF sensor.
  
 
 0.435
Haur_4327
PFAM: Heavy metal transport/detoxification protein; KEGG: rca:Rcas_0294 copper ion binding protein.
  
     0.434
Haur_2512
Cellulose-binding family II; PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 16; cellulose-binding family II; Fibronectin type III domain protein; KEGG: sco:SCO6596 secreted protein.
       0.433
Haur_3927
KEGG: rca:Rcas_0225 hypothetical protein.
  
     0.431
Haur_2729
Multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sth:STH493 two-component sensor histidine kinase.
  
 
 0.423
Haur_0602
Multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rca:Rcas_0284 multi-sensor signal transduction histidine kinase.
 
 
 0.407
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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