STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2550PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3742 ABC transporter related. (330 aa)    
Predicted Functional Partners:
Haur_2551
PFAM: ABC-2 type transporter; KEGG: rca:Rcas_1509 ABC-2 type transporter.
 
    0.958
Haur_4230
PFAM: ABC-2 type transporter; KEGG: deh:cbdb_A774 ABC transporter, permease protein.
  
    0.803
Haur_1889
PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0217 ABC-2 type transporter.
  
    0.795
Haur_3012
PFAM: ABC-2 type transporter; KEGG: rxy:Rxyl_0438 ABC-2 type transporter.
 
    0.792
Haur_1890
PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0216 ABC-2 type transporter.
 
  
 0.788
Haur_2553
PFAM: Rhomboid family protein; KEGG: jan:Jann_3255 rhomboid-like protein.
   
   0.645
Haur_2552
Hypothetical protein.
       0.642
Haur_2554
Hypothetical protein.
       0.580
Haur_1604
PFAM: protein of unknown function DUF214; KEGG: dsy:DSY3655 hypothetical protein.
 
     0.486
hisZ
Histidine--tRNA ligase; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.
 
     0.462
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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