STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2609PFAM: regulatory protein TetR; KEGG: sen:SACE_3302 TetR-family transcriptional regulator. (194 aa)    
Predicted Functional Partners:
Haur_2608
PFAM: aldo/keto reductase; KEGG: rle:RL3415 putative oxidoreductase.
       0.578
Haur_1518
KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein.
  
     0.433
Haur_0830
PFAM: monooxygenase FAD-binding; KEGG: gvi:gll1952 hypothetical protein.
  
     0.421
Haur_0829
PFAM: monooxygenase FAD-binding; KEGG: gvi:gll1952 hypothetical protein.
  
     0.415
Haur_4021
KEGG: sdn:Sden_2265 hypothetical protein.
  
     0.412
Haur_2607
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: bbt:BBta_1164 putative phosphodiesterase (YfcE).
       0.405
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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