STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2626KEGG: mbu:Mbur_0235 hypothetical protein. (385 aa)    
Predicted Functional Partners:
Haur_0094
PFAM: cell wall hydrolase/autolysin; KEGG: bha:BH3665 N-acetylmuramoyl-L-alanine amidase, major autolysin.
    
   0.796
Haur_3557
KEGG: rrs:RoseRS_3306 hypothetical protein.
  
 
 0.568
Haur_0908
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_1833 ABC transporter related.
   
 
 0.540
Haur_1468
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2431 ABC transporter related.
   
 
 0.540
Haur_1603
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0694 ABC transporter related.
   
 
 0.540
Haur_2605
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa42490 putative ABC transporter ATP-binding protein.
   
 
 0.540
Haur_2627
Hypothetical protein; KEGG: rca:Rcas_1834 tetratricopeptide TPR_2 repeat protein.
       0.503
Haur_3076
PFAM: TPR repeat-containing protein; Lytic transglycosylase catalytic; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_2690 lytic transglycosylase catalytic.
  
  
 0.450
Haur_2008
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: rpc:RPC_3036 amino acid adenylation.
  
    0.424
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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