STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2649SMART: helix-turn-helix domain protein; KEGG: bay:RBAM_030730 hypothetical protein. (303 aa)    
Predicted Functional Partners:
Haur_4836
PFAM: regulatory protein TetR; KEGG: nfa:nfa44560 putative transcriptional regulator.
  
     0.684
Haur_2650
PFAM: beta-lactamase domain protein; KEGG: gka:GK1996 hypothetical protein.
 
    0.655
Haur_2648
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: tcx:Tcr_1011 periplasmic ATP/GTP-binding protein.
       0.564
Haur_2024
KEGG: ava:Ava_1266 xenobiotic compound monooxygenase, DszA family, A subunit.
  
     0.538
Haur_2651
KEGG: rrs:RoseRS_2927 hypothetical protein.
       0.500
Haur_0572
PFAM: regulatory protein ArsR; Activator of Hsp90 ATPase 1 family protein; KEGG: xau:Xaut_1920 activator of HSP90 ATPase 1 family protein.
  
    0.462
Haur_2555
PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro03383 transcriptional regulator, TetR family.
  
     0.440
Haur_1964
PFAM: regulatory protein MarR; KEGG: bur:Bcep18194_B1273 transcriptional regulator, MarR family.
  
 
   0.402
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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