STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2671PFAM: DNA/RNA non-specific endonuclease; KEGG: gvi:glr0075 sugar-non-specific nuclease NucA homolog. (470 aa)    
Predicted Functional Partners:
Haur_0419
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rrs:RoseRS_2828 endonuclease/exonuclease/phosphatase.
   
 0.921
Haur_2149
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: gka:GK1763 5'-nucleotidase; Belongs to the 5'-nucleotidase family.
 
  
 0.881
Haur_3374
PFAM: beta-lactamase domain protein; KEGG: rrs:RoseRS_0588 beta-lactamase domain protein.
   
   0.789
Haur_4973
PFAM: Nuclease A inhibitor family protein; KEGG: ava:Ava_B0337 nuclease A inhibitor-like.
 
    0.787
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.554
Haur_3084
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
    0.539
Haur_2673
KEGG: mba:Mbar_A1046 putative ABC-2 type transport system permease protein.
       0.464
Haur_2674
ABC-type Na+ efflux pump permease component-like; KEGG: mac:MA4365 conserved hypothetical protein.
       0.464
Haur_2672
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA4366 ABC transporter, ATP-binding protein.
       0.458
Haur_4172
PFAM: SpoVR family protein; KEGG: rrs:RoseRS_3527 SpoVR family protein.
   
    0.445
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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