STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2689PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_3682 glycosyl transferase, family 2. (331 aa)    
Predicted Functional Partners:
Haur_0245
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: rrs:RoseRS_3756 riboflavin biosynthesis protein RibF; Belongs to the ribF family.
 
      0.769
Haur_2597
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.705
Haur_1796
PFAM: sugar transferase; KEGG: rca:Rcas_1950 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.682
Haur_2690
PFAM: Septum formation initiator; KEGG: rca:Rcas_1330 septum formation initiator.
       0.625
Haur_4228
PFAM: sugar transferase; KEGG: rca:Rcas_4266 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.617
Haur_1239
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: gvi:glr3235 dTDP-glucose 4-6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.510
Haur_3132
PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_3367 ABC-2 type transporter.
 
  
 0.492
Haur_3294
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_3594 glycosyl transferase, group 1.
 
 
    0.485
Haur_2691
PFAM: protein of unknown function DUF583; KEGG: rca:Rcas_1331 protein of unknown function DUF583.
   
   0.476
Haur_2462
NAD-dependent epimerase/dehydratase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.465
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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