STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2691PFAM: protein of unknown function DUF583; KEGG: rca:Rcas_1331 protein of unknown function DUF583. (145 aa)    
Predicted Functional Partners:
Haur_2692
KEGG: cth:Cthe_2379 hypothetical protein.
       0.793
Haur_3687
PFAM: peptidase M23B; KEGG: rca:Rcas_2144 peptidase M23B.
 
   
 0.647
Haur_2690
PFAM: Septum formation initiator; KEGG: rca:Rcas_1330 septum formation initiator.
       0.543
Haur_2689
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_3682 glycosyl transferase, family 2.
   
   0.476
Haur_0863
PFAM: peptidase M23B; KEGG: rrs:RoseRS_4626 peptidase M23B.
 
   
 0.458
Haur_0764
PFAM: 60 kDa inner membrane insertion protein; KEGG: rca:Rcas_1427 60 kDa inner membrane insertion protein.
 
     0.436
Haur_2907
PFAM: peptidase M23B; KEGG: rrs:RoseRS_0052 peptidase M23B.
 
   
 0.433
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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