STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2858PFAM: Methicillin resistance protein; KEGG: mta:Moth_2408 methicillin resistance protein. (342 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
       0.780
Haur_2859
Hypothetical protein.
       0.623
Haur_2860
KEGG: syx:SynWH7803_1189 uncharacterized membrane protein.
       0.504
Haur_2861
Hypothetical protein.
       0.504
speH
S-adenosylmethionine decarboxylase related; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.
       0.504
Haur_2665
PFAM: VanW family protein; KEGG: rca:Rcas_2379 VanW family protein.
  
     0.490
Haur_3151
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rca:Rcas_4105 thioredoxin; Belongs to the thioredoxin family.
  
     0.477
Haur_4407
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rca:Rcas_4105 thioredoxin; Belongs to the thioredoxin family.
  
     0.464
Haur_4059
PFAM: VanW family protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rca:Rcas_2379 VanW family protein.
  
     0.463
Haur_2733
PFAM: VanW family protein; KEGG: rca:Rcas_0036 VanW family protein.
  
     0.456
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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