STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_2884Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rca:Rcas_0252 transcriptional regulator, Crp/Fnr family. (218 aa)    
Predicted Functional Partners:
Haur_0049
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: mav:MAV_0092 transcriptional regulator, Crp/Fnr family protein.
  
     0.773
Haur_3689
PFAM: cyclic nucleotide-binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rrs:RoseRS_3166 cyclic nucleotide-binding protein.
  
     0.690
Haur_0306
PFAM: cyclic nucleotide-binding; KEGG: rca:Rcas_3910 cyclic nucleotide-binding protein.
  
     0.491
Haur_2883
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rxy:Rxyl_0055 NAD-dependent epimerase/dehydratase.
  
    0.483
Haur_1334
Hypothetical protein; KEGG: ngo:NGO0363 putative stress-sensitive restriction system protein.
    
 0.446
Haur_1077
Adenylate/guanylate cyclase with GAF sensor and FHA domain; PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: rca:Rcas_2253 adenylate/guanylate cyclase with GAF sensor and FHA domain.
 
 
 0.428
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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