STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3163PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2796 von Willebrand factor, type A. (550 aa)    
Predicted Functional Partners:
Haur_3927
KEGG: rca:Rcas_0225 hypothetical protein.
  
     0.723
Haur_3630
KEGG: rca:Rcas_2727 glycosyl transferase family 39.
 
 
   0.709
Haur_1093
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39.
  
     0.699
Haur_4225
KEGG: rca:Rcas_2725 hypothetical protein.
  
     0.689
Haur_0777
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0525 ABC transporter related.
  
 
 0.656
Haur_0090
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3987 tetratricopeptide TPR_2 repeat protein.
 
   
 0.642
Haur_4332
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
 
    0.637
Haur_0456
PFAM: Methyltransferase type 11; KEGG: rca:Rcas_2343 methyltransferase type 11.
 
     0.631
Haur_4127
KEGG: rca:Rcas_1976 hypothetical protein.
  
     0.617
Haur_0250
TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rca:Rcas_3820 hypothetical protein.
  
     0.614
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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