STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3169PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_4565 stage II sporulation E family protein. (238 aa)    
Predicted Functional Partners:
Haur_1422
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_2161 anti-sigma-factor antagonist.
  
 
 0.750
Haur_3866
KEGG: rca:Rcas_0292 glycosyl transferase family 39.
  
     0.725
Haur_2538
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4.
  
     0.702
Haur_4465
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4391 O-antigen polymerase.
  
     0.674
Haur_0081
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_3973 PBS lyase heat domain protein repeat-containing protein.
 
     0.671
Haur_1122
Hypothetical protein; KEGG: rrs:RoseRS_0779 glycosyl transferase, family 39.
  
     0.656
Haur_3865
PFAM: NHL repeat containing protein; KEGG: rca:Rcas_0293 NHL repeat containing protein.
  
     0.645
Haur_3316
PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_3119 peptidase C60, sortase A and B.
  
    0.642
Haur_3170
KEGG: sth:STH2446 hypothetical protein.
       0.592
Haur_3339
KEGG: rrs:RoseRS_1607 hypothetical protein.
  
     0.581
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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