STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3180PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gka:GK0942 Mg-protoporphyrin IX monomethyl ester oxidative cyclase. (646 aa)    
Predicted Functional Partners:
Haur_4117
KEGG: rca:Rcas_0802 4-vinyl reductase 4VR.
  
  
 0.944
Haur_1617
Hypothetical protein.
  
  
 0.801
Haur_4770
Hypothetical protein.
  
  
 0.801
Haur_1100
PFAM: protein of unknown function DUF344; KEGG: rrs:RoseRS_1080 protein of unknown function DUF344.
   
    0.749
Haur_4646
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2372 radical SAM domain protein.
 
  
 0.458
Haur_3179
PFAM: SMC domain protein; KEGG: rrs:RoseRS_0905 SMC domain protein.
       0.437
Haur_1001
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.400
Haur_1841
KEGG: mxa:MXAN_2888 coproporphyrinogen III oxidase family protein; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.400
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.