STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3218PFAM: LmbE family protein; KEGG: rrs:RoseRS_0663 LmbE family protein. (304 aa)    
Predicted Functional Partners:
Haur_3402
KEGG: rrs:RoseRS_0006 hypothetical protein.
  
     0.755
Haur_3401
KEGG: rrs:RoseRS_0007 hypothetical protein.
  
     0.754
Haur_2249
PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_2209 glycosyl transferase group 1.
  
    0.661
Haur_3219
KEGG: rca:Rcas_4135 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase HD region.
       0.501
Haur_3117
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_1285 protein of unknown function DUF95, transmembrane.
  
     0.479
Haur_4437
KEGG: btk:BT9727_2476 hypothetical protein.
  
    0.431
Haur_3488
KEGG: oih:OB0782 hypothetical protein.
  
    0.410
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.