STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3269PFAM: GCN5-related N-acetyltransferase; KEGG: lpc:LPC_2172 nucleotidyltransferase PLUS glutamate rich protein GrpB PLUS ribosomal protein alanine acetyltransferase. (174 aa)    
Predicted Functional Partners:
Haur_3268
PFAM: CBS domain containing protein; KEGG: rha:RHA1_ro00151 probable IMP dehydrogenase.
  
    0.517
Haur_3089
PFAM: GCN5-related N-acetyltransferase; KEGG: bcy:Bcer98_2842 GCN5-related N-acetyltransferase.
  
     0.483
Haur_3267
KEGG: rca:Rcas_4255 ferredoxin--NADP(+) reductase.
       0.479
Haur_3483
PFAM: GCN5-related N-acetyltransferase; KEGG: bcy:Bcer98_3436 GCN5-related N-acetyltransferase.
  
     0.470
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.444
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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