STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3332PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04654 permease of the major facilitator superfamily. (411 aa)    
Predicted Functional Partners:
Haur_3331
KEGG: ava:Ava_3715 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
     0.952
Haur_3330
Transcriptional regulator, ArsR family; PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein ArsR; KEGG: rca:Rcas_2315 transcriptional regulator, ArsR family.
     
 0.782
Haur_3333
Hypothetical protein.
       0.518
Haur_3329
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rle:RL4235 putative short-chain dehydrogenase/reductase.
       0.505
Haur_2932
PFAM: NMT1/THI5 like domain protein; KEGG: pna:Pnap_2656 multi-sensor signal transduction histidine kinase.
  
     0.414
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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