STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3706PFAM: beta-lactamase domain protein; KEGG: rrs:RoseRS_2738 beta-lactamase domain protein. (201 aa)    
Predicted Functional Partners:
Haur_1643
PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: gka:GK2088 hypothetical protein.
 
  0.948
Haur_3311
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
     
  0.900
Haur_3707
TIGRFAM: polymorphic outer membrane protein; KEGG: rrs:RoseRS_2393 polymorphic outer membrane protein.
       0.536
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
   
 0.425
Haur_2346
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: pdi:BDI_0541 pyridine nucleotide-disulphide oxidoreductase.
  
 0.414
Haur_3705
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: asa:ASA_0164 maltodextrin glucosidase; Belongs to the glycosyl hydrolase 13 family.
       0.407
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.