STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_3813TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: amt:Amet_0148 peptidase T-like protein. (360 aa)    
Predicted Functional Partners:
Haur_3814
PFAM: penicillin-binding protein transpeptidase; KEGG: rca:Rcas_3956 peptidoglycan glycosyltransferase.
       0.709
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
    
 0.624
Haur_3812
Peptidase S41; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: rca:Rcas_3957 peptidase S41.
       0.578
Haur_4725
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: sth:STH1865 Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.
 
 
 0.494
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
 
 0.484
Haur_2751
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: rca:Rcas_4452 peptidase M24; Belongs to the peptidase M24B family.
 
 
 0.475
Haur_4885
Glutamyl aminopeptidase; PFAM: peptidase M20; peptidase M42 family protein; KEGG: bsu:BG12317 similar to endo-1,4-beta-glucanase.
 
  
 0.460
Haur_0944
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3291 carboxyl transferase.
      0.453
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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