Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Haur_3920 | Haur_3921 | Haur_3920 | Haur_3921 | KEGG: rca:Rcas_2646 hypothetical protein. | TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: ava:Ava_3408 ribonuclease BN. | 0.580 |
Haur_3920 | rsmI | Haur_3920 | Haur_3919 | KEGG: rca:Rcas_2646 hypothetical protein. | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.741 |
Haur_3921 | Haur_3920 | Haur_3921 | Haur_3920 | TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: ava:Ava_3408 ribonuclease BN. | KEGG: rca:Rcas_2646 hypothetical protein. | 0.580 |
Haur_3921 | rsmI | Haur_3921 | Haur_3919 | TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: ava:Ava_3408 ribonuclease BN. | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.557 |
rsmI | Haur_3920 | Haur_3919 | Haur_3920 | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | KEGG: rca:Rcas_2646 hypothetical protein. | 0.741 |
rsmI | Haur_3921 | Haur_3919 | Haur_3921 | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: ava:Ava_3408 ribonuclease BN. | 0.557 |