STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4027PFAM: ABC-3 protein; KEGG: rca:Rcas_1721 transcriptional regulator, MarR family. (371 aa)    
Predicted Functional Partners:
Haur_4029
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_1723 ABC transporter related.
 0.995
Haur_4030
PFAM: periplasmic solute binding protein; KEGG: rrs:RoseRS_3070 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 0.984
Haur_4028
PFAM: ABC-3 protein; KEGG: rca:Rcas_1722 ABC-3 protein.
 
  
 
0.967
Haur_2065
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1257 ABC transporter related.
 
 0.901
Haur_3045
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3069 ABC transporter related.
 
 0.901
Haur_2845
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A1231 ABC transporter related.
 
 0.890
Haur_3046
PFAM: periplasmic solute binding protein; KEGG: rxy:Rxyl_1141 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.884
Haur_2064
PFAM: periplasmic solute binding protein; KEGG: fal:FRAAL0163 manganese ABC transporter; Belongs to the bacterial solute-binding protein 9 family.
  
 0.875
Haur_2846
PFAM: periplasmic solute binding protein; KEGG: nmu:Nmul_A1232 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.873
Haur_4031
PFAM: regulatory protein MarR; iron dependent repressor; FeoA family protein; KEGG: rrs:RoseRS_3986 FeoA family protein.
 
  
 0.755
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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