STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4060PFAM: protein of unknown function UPF0118; KEGG: rca:Rcas_2485 protein of unknown function UPF0118. (404 aa)    
Predicted Functional Partners:
Haur_4059
PFAM: VanW family protein; Tetratricopeptide TPR_2 repeat protein; KEGG: rca:Rcas_2379 VanW family protein.
 
     0.792
Haur_4061
KEGG: rca:Rcas_0805 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.496
Haur_4062
PFAM: protein of unknown function DUF820; KEGG: rca:Rcas_1703 protein of unknown function DUF820.
       0.483
Haur_4063
Hypothetical protein.
       0.483
Haur_4064
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rca:Rcas_1080 site-specific DNA-methyltransferase (adenine-specific); Belongs to the N(4)/N(6)-methyltransferase family.
       0.483
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.450
Haur_4058
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_2495 anti-sigma-factor antagonist.
       0.445
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
 
     0.442
Haur_4833
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: rca:Rcas_3931 single-stranded-DNA-specific exonuclease RecJ.
 
     0.424
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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