STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4095KEGG: rca:Rcas_1943 membrane protein-like protein. (658 aa)    
Predicted Functional Partners:
Haur_3321
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rrs:RoseRS_0120 TPR repeat-containing protein.
  
     0.739
Haur_4332
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
     0.730
Haur_3630
KEGG: rca:Rcas_2727 glycosyl transferase family 39.
 
     0.714
Haur_0090
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3987 tetratricopeptide TPR_2 repeat protein.
 
     0.713
Haur_4691
KEGG: rrs:RoseRS_2563 hypothetical protein.
  
     0.707
Haur_4225
KEGG: rca:Rcas_2725 hypothetical protein.
 
     0.703
Haur_4127
KEGG: rca:Rcas_1976 hypothetical protein.
  
     0.695
Haur_0064
KEGG: rrs:RoseRS_2654 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.684
Haur_4537
Hypothetical protein; KEGG: rrs:RoseRS_1623 helicase.
  
     0.678
Haur_3383
KEGG: rrs:RoseRS_3713 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.675
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.