STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Haur_4188KEGG: rca:Rcas_0895 hypothetical protein. (278 aa)    
Predicted Functional Partners:
Haur_3321
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rrs:RoseRS_0120 TPR repeat-containing protein.
  
     0.768
Haur_3144
KEGG: rrs:RoseRS_0323 hypothetical protein.
  
     0.747
Haur_4465
PFAM: O-antigen polymerase; KEGG: rrs:RoseRS_4391 O-antigen polymerase.
 
     0.705
Haur_1088
PFAM: Peptidoglycan-binding LysM; KEGG: rca:Rcas_0063 peptidoglycan-binding LysM.
 
     0.684
Haur_4245
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; PA14 domain protein; SMART: Animal peptidoglycan recognition protein PGRP; PA14-related domain protein; KEGG: rrs:RoseRS_1610 N-acetylmuramoyl-L-alanine amidase, family 2.
  
    0.667
Haur_3117
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_1285 protein of unknown function DUF95, transmembrane.
  
     0.664
Haur_4332
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
 
     0.653
Haur_0418
KEGG: rca:Rcas_3116 hypothetical protein.
  
     0.640
Haur_4187
Hypothetical protein.
       0.639
Haur_2538
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_0532 tetratricopeptide TPR_4.
  
     0.633
Your Current Organism:
Herpetosiphon aurantiacus
NCBI taxonomy Id: 316274
Other names: H. aurantiacus DSM 785, Herpetosiphon aurantiacus ATCC 23779, Herpetosiphon aurantiacus DSM 785
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